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add1 adducin 1 (alpha) [ Cebidichthys violaceus (monkeyface prickleback) ]

Gene ID: 137868162, updated on 25-Sep-2024

Summary

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Gene symbol
add1
Gene description
adducin 1 (alpha)
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebidichthys violaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Stichaeidae; Xiphisterinae; Cebidichthys
Orthologs
human zebrafish all
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Genomic context

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See add1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_09 current fCebVio1.0.p (GCF_023349555.1) Unplaced Scaffold NW_027176985.1 (380396..404029)

NW_027176985.1Genomic Context describing neighboring genes Neighboring gene SHC (Src homology 2 domain containing) transforming protein 3 Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D Neighboring gene alpha-synuclein-like Neighboring gene NOP14 nucleolar protein homolog (yeast)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_027176985 Unplaced Scaffold Reference fCebVio1.0.p

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in barbed-end actin filament capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of establishment of endothelial barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-adducin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023349555.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCebVio1.0.p

Genomic

  1. NW_027176985.1 Reference fCebVio1.0.p

    Range
    380396..404029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068704730.1 → XP_068560831.1  alpha-adducin isoform X1

  2. XM_068704732.1 → XP_068560833.1  alpha-adducin isoform X3

  3. XM_068704731.1 → XP_068560832.1  alpha-adducin isoform X2

  4. XM_068704736.1 → XP_068560837.1  alpha-adducin isoform X6

  5. XM_068704738.1 → XP_068560839.1  alpha-adducin isoform X8

  6. XM_068704737.1 → XP_068560838.1  alpha-adducin isoform X7

  7. XM_068704741.1 → XP_068560842.1  alpha-adducin isoform X11

  8. XM_068704742.1 → XP_068560843.1  alpha-adducin isoform X12

  9. XM_068704743.1 → XP_068560844.1  alpha-adducin isoform X13

  10. XM_068704735.1 → XP_068560836.1  alpha-adducin isoform X5

  11. XM_068704739.1 → XP_068560840.1  alpha-adducin isoform X9

  12. XM_068704733.1 → XP_068560834.1  alpha-adducin isoform X4

  13. XM_068704740.1 → XP_068560841.1  alpha-adducin isoform X10

Nucleotide Protein
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