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sema4d sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [ Cebidichthys violaceus (monkeyface prickleback) ]

Gene ID: 137868146, updated on 25-Sep-2024

Summary

Gene symbol
sema4d
Gene description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Gene type
protein coding
RefSeq status
MODEL
Organism
Cebidichthys violaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Zoarcales; Stichaeidae; Xiphisterinae; Cebidichthys
Orthologs
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Genomic context

See sema4d in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_09 current fCebVio1.0.p (GCF_023349555.1) Unplaced Scaffold NW_027176985.1 (337796..376321, complement)

NW_027176985.1Genomic Context describing neighboring genes Neighboring gene sphingosine 1-phosphate receptor 3 Neighboring gene SHC (Src homology 2 domain containing) transforming protein 3 Neighboring gene adducin 1 (alpha) Neighboring gene NOP14 nucleolar protein homolog (yeast)

Genomic regions, transcripts, and products

Genomic Sequence:
NW_027176985 Unplaced Scaffold Reference fCebVio1.0.p

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023349555.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fCebVio1.0.p

Genomic

  1. NW_027176985.1 Reference fCebVio1.0.p

    Range
    337796..376321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068704708.1XP_068560809.1  semaphorin-4D isoform X5

  2. XM_068704704.1XP_068560805.1  semaphorin-4D isoform X2

  3. XM_068704705.1XP_068560806.1  semaphorin-4D isoform X3

  4. XM_068704707.1XP_068560808.1  semaphorin-4D isoform X4

  5. XM_068704703.1XP_068560804.1  semaphorin-4D isoform X1

  6. XM_068704706.1XP_068560807.1  semaphorin-4D isoform X3