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LOC136115406 ADAMTS-like protein 1 [ Patagioenas fasciata (band-tailed pigeon) ]

Gene ID: 136115406, updated on 3-Aug-2024

Summary

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Gene symbol
LOC136115406
Gene description
ADAMTS-like protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Patagioenas fasciata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Patagioenas
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Genomic context

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See LOC136115406 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_06 current bPatFas1.hap2 (GCF_036971685.1) Z NC_089087.1 (18608437..18691753, complement)

Chromosome Z - NC_089087.1Genomic Context describing neighboring genes Neighboring gene small Cajal body-specific RNA 8 Neighboring gene HAUS augmin like complex subunit 6 Neighboring gene U1 spliceosomal RNA Neighboring gene stabilizer of axonemal microtubules 1 Neighboring gene ADAMTS-like protein 1 Neighboring gene SH3 domain containing GRB2 like 2, endophilin A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089087.1 Chromosome Z Reference bPatFas1.hap2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036971685.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPatFas1.hap2

Genomic

  1. NC_089087.1 Reference bPatFas1.hap2

    Range
    18608437..18691753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065861518.1 → XP_065717590.1  ADAMTS-like protein 1

Nucleotide Protein
Heading Accession and Version