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psmc5 proteasome 26S subunit, ATPase 5 [ Platichthys flesus (European flounder) ]

Gene ID: 133976221, updated on 29-Mar-2024

Summary

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Gene symbol
psmc5
Gene description
proteasome 26S subunit, ATPase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Platichthys flesus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Pleuronectidae; Platichthys
Orthologs
human zebrafish all
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Genomic context

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See psmc5 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current fPlaFle2.1 (GCF_949316205.1) 20 NC_084964.1 (16399157..16402780, complement)

Chromosome 20 - NC_084964.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 2b Neighboring gene MAGUK p55 scaffold protein 3b Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D2 Neighboring gene ataxin 7 like 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084964.1 Chromosome 20 Reference fPlaFle2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proteasome-activating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome regulatory particle, base subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome regulatory subunit 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949316205.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fPlaFle2.1

Genomic

  1. NC_084964.1 Reference fPlaFle2.1

    Range
    16399157..16402780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062414367.1 → XP_062270351.1  26S proteasome regulatory subunit 8

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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