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LOC133931444 beta-glucosidase 25 [ Phragmites australis (common reed) ]

Gene ID: 133931444, updated on 12-Jun-2024

Summary

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Gene symbol
LOC133931444
Gene description
beta-glucosidase 25
See related
EnsemblRapid:ENSXNDG00000004365
Gene type
protein coding
RefSeq status
MODEL
Organism
Phragmites australis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Arundinoideae; Molinieae; Molininae; Phragmites
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Genomic context

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See LOC133931444 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_01 current lpPhrAust1.1 (GCF_958298935.1) 10 NC_084930.1 (3460545..3465256, complement)

Chromosome 10 - NC_084930.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC133931148 Neighboring gene calcium-binding protein KIC-like Neighboring gene large ribosomal subunit protein uL24c-like Neighboring gene dihydroflavonol 4-reductase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084930.1 Chromosome 10 Reference lpPhrAust1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using Transcriptomics to Identify Differential Gene Expression in Response to Salinity among Australian Phragmites australis Clones. Holmes GD, et al. Front Plant Sci, 2016. PMID 27148279, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_958298935.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lpPhrAust1.1

Genomic

  1. NC_084930.1 Reference lpPhrAust1.1

    Range
    3460545..3465256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_062378324.1 → XP_062234308.1  beta-glucosidase 25 isoform X4

  2. XM_062378323.1 → XP_062234307.1  beta-glucosidase 25 isoform X4

  3. XM_062378322.1 → XP_062234306.1  beta-glucosidase 25 isoform X3

  4. XM_062378325.1 → XP_062234309.1  beta-glucosidase 25 isoform X5

  5. XM_062378321.1 → XP_062234305.1  beta-glucosidase 25 isoform X3

    Related
    ENSXNDP00000006029.1, ENSXNDT00000006718.1

  6. XM_062378320.1 → XP_062234304.1  beta-glucosidase 25 isoform X2

    Related
    ENSXNDP00000006023.1, ENSXNDT00000006712.1

  7. XM_062378319.1 → XP_062234303.1  beta-glucosidase 25 isoform X1

    Related
    ENSXNDP00000006026.1, ENSXNDT00000006715.1
Nucleotide Protein
Heading Accession and Version

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