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LOC132444178 STARR-positive B cell enhancer ABC_E3172 [ Mus musculus (house mouse) ]

Gene ID: 132444178, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132444178
Gene description
STARR-positive B cell enhancer ABC_E3172
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132444178 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (91261692..91261993)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene interleukin 10 receptor, beta Neighboring gene STARR-positive B cell enhancer ABC_E3171 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:91433882-91434035 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:91442739-91442929 Neighboring gene STARR-positive B cell enhancer ABC_E10923 Neighboring gene STARR-positive B cell enhancer ABC_E9937 Neighboring gene STARR-positive B cell enhancer ABC_E10924 Neighboring gene RIKEN cDNA A930006K02 gene Neighboring gene predicted gene, 46562 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:91470747-91470930 Neighboring gene STARR-seq mESC enhancer starr_41478 Neighboring gene STARR-seq mESC enhancer starr_41479 Neighboring gene interferon (alpha and beta) receptor 1 Neighboring gene STARR-positive B cell enhancer ABC_E5561 Neighboring gene cell division cycle 20 homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_240596.1 

    Range
    101..402
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    91261692..91261993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version