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LOC132441396 STARR-positive B cell enhancer mm9_chr10:94723743-94724044 [ Mus musculus (house mouse) ]

Gene ID: 132441396, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132441396
Gene description
STARR-positive B cell enhancer mm9_chr10:94723743-94724044
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132441396 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (95096971..95097272)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9348 Neighboring gene predicted gene, 40744 Neighboring gene STARR-seq mESC enhancer starr_27609 Neighboring gene STARR-seq mESC enhancer starr_27611 Neighboring gene predicted gene, 53600 Neighboring gene STARR-positive B cell enhancer mm9_chr10:94613739-94614040 Neighboring gene predicted gene, 29684 Neighboring gene STARR-seq mESC enhancer starr_27617 Neighboring gene CASP2 and RIPK1 domain containing adaptor with death domain Neighboring gene STARR-positive B cell enhancer mm9_chr10:94720661-94720962 Neighboring gene STARR-seq mESC enhancer starr_27622 Neighboring gene STARR-positive B cell enhancer ABC_E6911 Neighboring gene STARR-seq mESC enhancer starr_27628 Neighboring gene RIKEN cDNA 2310039L15 gene Neighboring gene STARR-seq mESC enhancer starr_27629 Neighboring gene STARR-seq mESC enhancer starr_27631 Neighboring gene STARR-positive B cell enhancer ABC_E3909 Neighboring gene STARR-positive B cell enhancer mm9_chr10:94834542-94834843 Neighboring gene STARR-seq mESC enhancer starr_27632 Neighboring gene STARR-positive B cell enhancer ABC_E5173 Neighboring gene suppressor of cytokine signaling 2 Neighboring gene predicted gene, 33230

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_237818.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    95096971..95097272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version