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LOC131385311 STARR-seq mESC enhancer starr_34663 [ Mus musculus (house mouse) ]

Gene ID: 131385311, updated on 10-Feb-2024

Summary

Gene symbol
LOC131385311
Gene description
STARR-seq mESC enhancer starr_34663
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

See LOC131385311 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (57509149..57511440)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700072F12 gene Neighboring gene STARR-seq mESC enhancer starr_34662 Neighboring gene predicted gene, 48176 Neighboring gene predicted gene, 33294 Neighboring gene sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 Neighboring gene predicted gene, 33240 Neighboring gene STARR-seq mESC enhancer starr_34665 Neighboring gene STARR-seq mESC enhancer starr_34666 Neighboring gene STARR-seq mESC enhancer starr_34669 Neighboring gene kelch-like 3 Neighboring gene microRNA 874

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_221202.1 

    Range
    101..2392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    57509149..57511440
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)