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LOC131384849 STARR-seq mESC enhancer starr_33731 [ Mus musculus (house mouse) ]

Gene ID: 131384849, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131384849
Gene description
STARR-seq mESC enhancer starr_33731
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131384849 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (15617493..15619816)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1862 Neighboring gene STARR-seq mESC enhancer starr_33721 Neighboring gene predicted gene 9512 Neighboring gene STARR-seq mESC enhancer starr_33722 Neighboring gene STARR-seq mESC enhancer starr_33723 Neighboring gene VISTA enhancers mm1179 and mm1887 Neighboring gene VISTA enhancer mm1893 Neighboring gene STARR-seq mESC enhancer starr_33728 Neighboring gene STARR-seq mESC enhancer starr_33729 Neighboring gene VISTA enhancer mm1896 Neighboring gene predicted gene, 20043 Neighboring gene STARR-seq mESC enhancer starr_33730 Neighboring gene STARR-seq mESC enhancer starr_33733 Neighboring gene predicted gene 6556 Neighboring gene GLI-Kruppel family member GLI3 Neighboring gene VISTA enhancer mm1912 Neighboring gene VISTA enhancer mm652 Neighboring gene VISTA enhancer mm2028 Neighboring gene VISTA enhancer mm1935 Neighboring gene predicted gene, 57607

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_220740.1 

    Range
    101..2424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    15617493..15619816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version