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LOC131378071 STARR-seq mESC enhancer starr_28663 [ Mus musculus (house mouse) ]

Gene ID: 131378071, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131378071
Gene description
STARR-seq mESC enhancer starr_28663
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131378071 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (14127470..14128263)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_28638 Neighboring gene STARR-seq mESC enhancer starr_28640 Neighboring gene serine/threonine kinase 16 pseudogene Neighboring gene STARR-seq mESC enhancer starr_28641 Neighboring gene STARR-seq mESC enhancer starr_28642 Neighboring gene STARR-seq mESC enhancer starr_28643 Neighboring gene STARR-seq mESC enhancer starr_28644 Neighboring gene STARR-seq mESC enhancer starr_28645 Neighboring gene STARR-seq mESC enhancer starr_28646 Neighboring gene STARR-seq mESC enhancer starr_28647 Neighboring gene STARR-seq mESC enhancer starr_28649 Neighboring gene STARR-seq mESC enhancer starr_28650 Neighboring gene STARR-seq mESC enhancer starr_28652 Neighboring gene STARR-seq mESC enhancer starr_28653 Neighboring gene STARR-seq mESC enhancer starr_28655 Neighboring gene STARR-seq mESC enhancer starr_28657 Neighboring gene STARR-seq mESC enhancer starr_28658 Neighboring gene STARR-seq mESC enhancer starr_28659 Neighboring gene predicted gene, 30770 Neighboring gene RIKEN cDNA 4930554G24 gene Neighboring gene STARR-seq mESC enhancer starr_28661 Neighboring gene STARR-seq mESC enhancer starr_28662 Neighboring gene RIKEN cDNA 1700046C09 gene Neighboring gene POM121 membrane glycoprotein-like 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_218365.1 

    Range
    101..894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    14127470..14128263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version