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LOC131376922 STARR-seq mESC enhancer starr_26337 [ Mus musculus (house mouse) ]

Gene ID: 131376922, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131376922
Gene description
STARR-seq mESC enhancer starr_26337
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131376922 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (36876317..36879096)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_26314 Neighboring gene STARR-seq mESC enhancer starr_26315 Neighboring gene STARR-seq mESC enhancer starr_26316 Neighboring gene predicted gene, 40623 Neighboring gene STARR-seq mESC enhancer starr_26317 Neighboring gene STARR-seq mESC enhancer starr_26318 Neighboring gene STARR-seq mESC enhancer starr_26319 Neighboring gene STARR-seq mESC enhancer starr_26320 Neighboring gene STARR-seq mESC enhancer starr_26322 Neighboring gene STARR-seq mESC enhancer starr_26323 Neighboring gene STARR-seq mESC enhancer starr_26324 Neighboring gene STARR-seq mESC enhancer starr_26325 Neighboring gene VISTA enhancer mm693 Neighboring gene STARR-seq mESC enhancer starr_26326 Neighboring gene STARR-seq mESC enhancer starr_26327 Neighboring gene heparan sulfate (glucosamine) 3-O-sulfotransferase 5 Neighboring gene STARR-seq mESC enhancer starr_26330 Neighboring gene STARR-seq mESC enhancer starr_26331 Neighboring gene predicted gene, 22554 Neighboring gene STARR-seq mESC enhancer starr_26332 Neighboring gene STARR-seq mESC enhancer starr_26333 Neighboring gene STARR-seq mESC enhancer starr_26336 Neighboring gene STARR-positive B cell enhancer mm9_chr10:36693912-36694212 Neighboring gene STARR-seq mESC enhancer starr_26339 Neighboring gene STARR-seq mESC enhancer starr_26341 Neighboring gene STARR-seq mESC enhancer starr_26343 Neighboring gene STARR-seq mESC enhancer starr_26344 Neighboring gene histone deacetylase 2 Neighboring gene RIKEN cDNA 5930403N24 gene Neighboring gene STARR-positive B cell enhancer ABC_E6829 Neighboring gene myristoylated alanine rich protein kinase C substrate

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_217216.1 

    Range
    101..2880
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    36876317..36879096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version