U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC131339741 STARR-seq mESC enhancer starr_10430 [ Mus musculus (house mouse) ]

Gene ID: 131339741, updated on 10-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
LOC131339741
Gene description
STARR-seq mESC enhancer starr_10430
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC131339741 in Genome Data Viewer
Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (62583682..62585084)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933430I17 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62186055-62186242 Neighboring gene polymerase (DNA directed), epsilon 3 (p17 subunit) Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62213110-62213293 Neighboring gene STARR-positive B cell enhancer mm9_chr4:62222257-62222558 Neighboring gene regulator of G-protein signaling 3 Neighboring gene STARR-positive B cell enhancer mm9_chr4:62322547-62322847 Neighboring gene predicted gene, 52741 Neighboring gene STARR-seq mESC enhancer starr_10432 Neighboring gene predicted gene 11210 Neighboring gene predicted gene 11211 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62417671-62417854 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62418020-62418129 Neighboring gene predicted gene, 30699

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_209302.1 

    Range
    101..1503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    62583682..62585084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version