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LOC131296831 STARR-seq mESC enhancer starr_03189 [ Mus musculus (house mouse) ]

Gene ID: 131296831, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131296831
Gene description
STARR-seq mESC enhancer starr_03189
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131296831 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (180037568..180041702)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CDC42 binding protein kinase alpha Neighboring gene STARR-positive B cell enhancer mm9_chr1:182105294-182105595 Neighboring gene STARR-positive B cell enhancer ABC_E2024 Neighboring gene coenzyme Q8A Neighboring gene STARR-positive B cell enhancer ABC_E1237 Neighboring gene predicted gene, 57491 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:182156600-182156883 Neighboring gene predicted gene, 37336 Neighboring gene STARR-seq mESC enhancer starr_03192 Neighboring gene STARR-positive B cell enhancer ABC_E5867 Neighboring gene presenilin 2 Neighboring gene STARR-positive B cell enhancer ABC_E5868 Neighboring gene predicted gene, 31728 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:182226418-182226527 Neighboring gene predicted gene, 39713

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_205243.1 

    Range
    101..4235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    180037568..180041702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version