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LOC128925773 STARR-positive B cell enhancer ABC_E9112 [ Mus musculus (house mouse) ]

Gene ID: 128925773, updated on 8-Feb-2024

Summary

Gene symbol
LOC128925773
Gene description
STARR-positive B cell enhancer ABC_E9112
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr368395
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. A subregion was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. That CRM was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Oct 2023]
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Genomic context

See LOC128925773 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (102090829..102091129)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ras homolog family member G Neighboring gene STARR-positive B cell enhancer ABC_E3738 Neighboring gene stromal interaction molecule 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:109486578-109486731 Neighboring gene STARR-positive B cell enhancer mm9_chr7:109495952-109496253 Neighboring gene methyltransferase like 6 pseudogene Neighboring gene STARR-seq mESC enhancer starr_19708 Neighboring gene STARR-seq mESC enhancer starr_19712 Neighboring gene ribonucleotide reductase M1 Neighboring gene STARR-seq mESC enhancer starr_19713 Neighboring gene olfactory receptor family 55 subfamily B member 3 Neighboring gene olfactory receptor family 55 subfamily B member 4

Genomic regions, transcripts, and products

General gene information

Other Names

  • CapStarr-seq enhancer MGSCv37_chr7:109590145-109590332
  • regulatory region 368395

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_151441.2 

    Range
    101..401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    102090829..102091129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)