U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC128924461 CapStarr-seq enhancer MGSCv37_chr2:19310470-19310705 [ Mus musculus (house mouse) ]

Gene ID: 128924461, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
LOC128924461
Gene description
CapStarr-seq enhancer MGSCv37_chr2:19310470-19310705
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr367119
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in P5424 T cells and NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC128924461 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (19393654..19393889)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E5893 Neighboring gene RIKEN cDNA 4930447M23 gene Neighboring gene STARR-seq mESC enhancer starr_03820 Neighboring gene STARR-seq mESC enhancer starr_03823 Neighboring gene methionine sulfoxide reductase B2 Neighboring gene STARR-seq mESC enhancer starr_03825 Neighboring gene STARR-positive B cell enhancer ABC_E11703 Neighboring gene predicted gene, 33940 Neighboring gene predicted gene 13344 Neighboring gene pancreas specific transcription factor 1a, opposite strand Neighboring gene pancreas specific transcription factor, 1a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Other Names

  • regulatory region 367119

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_152421.1 

    Range
    101..336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    19393654..19393889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version