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LOC128924235 CapStarr-seq enhancer MGSCv37_chr1:51650842-51651025 [ Mus musculus (house mouse) ]

Gene ID: 128924235, updated on 8-Feb-2024

Summary

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Gene symbol
LOC128924235
Gene description
CapStarr-seq enhancer MGSCv37_chr1:51650842-51651025
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366896
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128924235 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (51633157..51633340)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9330175M20 gene Neighboring gene THO complex 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_00877 Neighboring gene STARR-seq mESC enhancer starr_00878 Neighboring gene STARR-positive B cell enhancer mm9_chr1:51515795-51516095 Neighboring gene STARR-positive B cell enhancer ABC_E7721 Neighboring gene STARR-positive B cell enhancer ABC_E1542 Neighboring gene STARR-seq mESC enhancer starr_00879 Neighboring gene nucleic acid binding protein 1 Neighboring gene STARR-seq mESC enhancer starr_00881 Neighboring gene predicted gene, 17767 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:51641775-51642017 Neighboring gene STARR-positive B cell enhancer mm9_chr1:51653904-51654205 Neighboring gene STARR-seq mESC enhancer starr_00883 Neighboring gene predicted gene, 31636 Neighboring gene STARR-seq mESC enhancer starr_00886 Neighboring gene STARR-seq mESC enhancer starr_00887 Neighboring gene STARR-seq mESC enhancer starr_00888 Neighboring gene STARR-seq mESC enhancer starr_00889 Neighboring gene myosin IB Neighboring gene STARR-seq mESC enhancer starr_00891 Neighboring gene predicted gene, 33795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 366896

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_150014.1 

    Range
    101..284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    51633157..51633340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version