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mir-1010 mir-1010 stem loop [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798509, updated on 4-Jan-2025

Summary

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Official Symbol
mir-1010provided by FlyBase
Official Full Name
mir-1010 stem loopprovided by FlyBase
Primary source
FLYBASE:FBgn0262382
Locus tag
Dmel_CR42905
See related
miRBase:MI0005871; AllianceGenome:FB:FBgn0262382
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR42905; dme-mir-1010; dme-miR-1010; Dmel\CR42905; miR-1010; miR-1010-5p
Summary
Enables mRNA base-pairing translational repressor activity. Involved in miRNA-mediated post-transcriptional gene silencing. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See mir-1010 in Genome Data Viewer
Location:
94A4-94A4; 3-74 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22292879..22292949)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18118601..18118671)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Shal K[+] channel interacting protein Neighboring gene long non-coding RNA:CR45224 Neighboring gene GLD2 poly(A) polymerase Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a TUTase/RNase complex required for Drosophila gametogenesis. Lin CJ, et al. RNA, 2017 Mar. PMID 27974621, Free PMC Article
  2. Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor. Bortolamiol-Becet D, et al. Mol Cell, 2015 Jul 16. PMID 26145174, Free PMC Article
  3. The mirtron miR-1010 functions in concert with its host gene SKIP to balance elevation of nAcRβ2. Amourda C, et al. Sci Rep, 2020 Feb 3. PMID 32015391, Free PMC Article
  4. Regulation of Large Number of Weak Targets-New Insights from Twin-microRNAs. Zhao Y, et al. Genome Biol Evol, 2018 Apr 1. PMID 29688430, Free PMC Article
  5. Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals. Okamura K, et al. Genes Dev, 2013 Apr 1. PMID 23535236, Free PMC Article

See all (39) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • mir-1010-RA; Dmel\mir-1010-RA; CR42905-RA; Dmel\CR42905-RA
  • mir-1010-RB; Dmel\mir-1010-RB; CR42905-RB; Dmel\CR42905-RB
  • mir-1010-RM; Dmel\mir-1010-RM; CR42905-RM; Dmel\CR42905-RM

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables mRNA base-pairing translational repressor activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    22292879..22292949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048461.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Research Materials