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mir-281-1 mir-281-1 stem loop [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798418, updated on 9-Dec-2024

Summary

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Official Symbol
mir-281-1provided by FlyBase
Official Full Name
mir-281-1 stem loopprovided by FlyBase
Primary source
FLYBASE:FBgn0286006
Locus tag
Dmel_CR42931
See related
miRBase:MI0000366; AllianceGenome:FB:FBgn0286006
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR33592; CR33594; CR33595; CR42931; dme-miR-281; dme-mir-281-1; dme-miR-281-1; Dmel\CR42931; mir-281; miR-281; MIR-281; miR-281-1; mir-281-1*; mir-281a; miR-281a; mir-281aS; miR-281aS; mir-P323-1
Old locus tag
CR33592; Dmel_CR33592; Dmel_CR33594; Dmel_CR33595
Summary
Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See mir-281-1 in Genome Data Viewer
Location:
48E4-48E4; 2-66 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (12170373..12170462, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (8057878..8057967, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Ornithine decarboxylase antizyme Neighboring gene antisense RNA:CR46194 Neighboring gene Small ribonucleoprotein particle protein SmD3 Neighboring gene mir-281-2 stem loop Neighboring gene Chaperonin containing TCP1 subunit 5 Neighboring gene Endonuclease G Neighboring gene antisense RNA:CR45264 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Various applications of TALEN- and CRISPR/Cas9-mediated homologous recombination to modify the Drosophila genome. Yu Z, et al. Biol Open, 2014 Apr 15. PMID 24659249, Free PMC Article
  2. Independent transcription of miR-281 in the intron of ODA in Drosophila melanogaster. Xiong H, et al. Biochem Biophys Res Commun, 2009 Jan 23. PMID 19073139
  3. Circadian rhythm-dependent alterations of gene expression in Drosophila brain lacking fragile X mental retardation protein. Xu S, et al. PLoS One, 2012. PMID 22655085, Free PMC Article
  4. MiR-219 represses expression of dFMR1 in Drosophila melanogaster. Wang C, et al. Life Sci, 2019 Feb 1. PMID 30528775
  5. 20-Hydroxyecdysone-responsive microRNAs of insects. Jin X, et al. RNA Biol, 2020 Oct. PMID 32482109, Free PMC Article

See all (49) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: mir-281aS; mir-281a; mir-P323-1
  • mir-281-1-RA; Dmel\mir-281-1-RA; CR42931-RA; Dmel\CR42931-RA
  • mir-281-1-RB; Dmel\mir-281-1-RB; CR42931-RB; Dmel\CR42931-RB
  • mir-281-1-RM; Dmel\mir-281-1-RM; CR42931-RM; Dmel\CR42931-RM

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    12170373..12170462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048095.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials