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lncRNA:marge long non-coding RNA:marge [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12797906, updated on 4-Jan-2025

Summary

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Official Symbol
lncRNA:margeprovided by FlyBase
Official Full Name
long non-coding RNA:margeprovided by FlyBase
Primary source
FLYBASE:FBgn0263380
Locus tag
Dmel_CR43432
See related
AllianceGenome:FB:FBgn0263380
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
chr3L:14942577..14942904; CR43432; Dmel\CR43432; lncRNA:CR43432; marge
Summary
Enables miRNA inhibitor activity via base-pairing. Involved in target-directed miRNA degradation. Is expressed in organism and yolk nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See lncRNA:marge in Genome Data Viewer
Location:
71A4-71A4; 3-42 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14976626..14977631, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14969726..14970731, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Bearded Neighboring gene ocho Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Endogenous transcripts direct microRNA degradation in Drosophila, and this targeted degradation is required for proper embryonic development. Kingston ER, et al. Mol Cell, 2022 Oct 20. PMID 36150386, Free PMC Article
  2. Structure-based whole-genome realignment reveals many novel noncoding RNAs. Will S, et al. Genome Res, 2013 Jun. PMID 23296921, Free PMC Article
  3. The Drosophila embryo at single-cell transcriptome resolution. Karaiskos N, et al. Science, 2017 Oct 13. PMID 28860209
  4. RNA-seq reveals post-transcriptional regulation of Drosophila insulin-like peptide dilp8 and the neuropeptide-like precursor Nplp2 by the exoribonuclease Pacman/XRN1. Jones CI, et al. Nucleic Acids Res, 2016 Jan 8. PMID 26656493, Free PMC Article
  5. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: long non-coding RNA:CR43432
  • lncRNA:marge-RA; Dmel\lncRNA:marge-RA; CR43432-RA; Dmel\CR43432-RA
  • lncRNA:marge-RB; Dmel\lncRNA:marge-RB; CR43432-RB; Dmel\CR43432-RB

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables miRNA inhibitor activity via base-pairing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in target-directed miRNA degradation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    14976626..14977631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048275.2 RNA Sequence

    Status: REVIEWED

  2. NR_048276.2 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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