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LOC127888462 H3K4me1 hESC enhancer GRCh37_chr17:79379388-79379942 [ Homo sapiens (human) ]

Gene ID: 127888462, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127888462
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:79379388-79379942
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127888462 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (81405588..81406142)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (82320752..82321306)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (79379388..79379942)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79352685-79353284 Neighboring gene long intergenic non-protein coding RNA 3048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79353285-79353884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79359790-79360358 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79361743-79362302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79362303-79362862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79362863-79363420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79364001-79364559 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79367354-79367911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79369995-79370603 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:79370604-79371212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79376071-79376596 Neighboring gene BAH domain and coiled-coil containing 1 Neighboring gene microRNA 4740 Neighboring gene Sharpr-MPRA regulatory region 9433 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:79386221-79386468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79386861-79387562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79390656-79391605 Neighboring gene uncharacterized LOC124904084 Neighboring gene microRNA 3186

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_138058.1 

    Range
    101..655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    81405588..81406142
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791805.1 Reference GRCh38.p14 PATCHES

    Range
    60226..60780
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    82320752..82321306
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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