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LOC127886501 H3K4me1 hESC enhancer GRCh37_chr17:30824438-30824945 [ Homo sapiens (human) ]

Gene ID: 127886501, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127886501
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:30824438-30824945
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127886501 in Genome Data Viewer
Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (32497420..32497927)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (33443187..33443694)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (30824438..30824945)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:30771309-30771924 Neighboring gene proteasome 26S subunit, non-ATPase 11 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:30812797-30813298 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8422 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8423 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:30814538-30815097 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:30817300-30817421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8425 Neighboring gene uncharacterized LOC124903982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:30830591-30831361 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:30832133-30832903 Neighboring gene uncharacterized LOC105371734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12033 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12034 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8426 Neighboring gene uncharacterized LOC107985012 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8427 Neighboring gene cyclin dependent kinase 5 regulatory subunit 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:30849483-30850006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:30850007-30850529 Neighboring gene myosin ID Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr17:30873137-30873636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12035 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:31010379-31011000 Neighboring gene MPRA-validated peak2803 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8428 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8429 Neighboring gene Sharpr-MPRA regulatory region 12414 Neighboring gene uncharacterized LOC124903981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12039

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_136214.1 

    Range
    101..608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    32497420..32497927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    33443187..33443694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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