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LOC127826382 NANOG hESC enhancer GRCh37_chr13:54957696-54958238 [ Homo sapiens (human) ]

Gene ID: 127826382, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127826382
Gene description
NANOG hESC enhancer GRCh37_chr13:54957696-54958238
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127826382 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (54383561..54384103)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (53599611..53600153)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (54957696..54958238)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:54701582-54702142 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:54706077-54706772 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54706773-54707468 Neighboring gene long intergenic non-protein coding RNA 458 Neighboring gene NANOG hESC enhancer GRCh37_chr13:54759857-54760516 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54841135-54841836 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54841837-54842538 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54842539-54843240 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:54843241-54843942 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:54880943-54881512 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:54930851-54931492 Neighboring gene microRNA 1297 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:54947288-54947939 Neighboring gene ribosomal protein L13a pseudogene 25 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:55060370-55061569 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:55146084-55146642 Neighboring gene uncharacterized LOC105370213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_127889.1 

    Range
    101..643
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    54383561..54384103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    53599611..53600153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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