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LOC127815060 NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88338413-88339088 [ Homo sapiens (human) ]

Gene ID: 127815060, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127815060
Gene description
NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88338413-88339088
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor and is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127815060 in Genome Data Viewer
Location:
chromosome: 9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (85723498..85724173)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (97873993..97874668)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (88338413..88339088)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 33 pseudogene 1 Neighboring gene uncharacterized LOC101927603 Neighboring gene ATP/GTP binding carboxypeptidase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88215278-88216090 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:88337736-88338412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19987 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19988 Neighboring gene kinesin family member 27 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19989 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19990 Neighboring gene NANOG hESC enhancer GRCh37_chr9:88433900-88434401 Neighboring gene kinesin family member 27 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_116578.1 

    Range
    101..776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    85723498..85724173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    97873993..97874668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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