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LOC127457750 OCT4-NANOG hESC enhancer GRCh37_chr7:136083954-136084620 [ Homo sapiens (human) ]

Gene ID: 127457750, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127457750
Gene description
OCT4-NANOG hESC enhancer GRCh37_chr7:136083954-136084620
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127457750 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (136399206..136399872)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (137706517..137707183)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (136083954..136084620)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375523 Neighboring gene RNA, U6 small nuclear 223, pseudogene Neighboring gene myotrophin Neighboring gene VISTA enhancer hs2077 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18683 Neighboring gene MPRA-validated peak6752 silencer Neighboring gene MPRA-validated peak6754 silencer Neighboring gene MPRA-validated peak6755 silencer Neighboring gene MPRA-validated peak6756 silencer Neighboring gene MPRA-validated peak6757 silencer Neighboring gene MPRA-validated peak6758 silencer Neighboring gene TRPC6 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26722 Neighboring gene MPRA-validated peak6760 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:136212537-136213037 Neighboring gene MPRA-validated peak6762 silencer Neighboring gene ZP3 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:136321846-136322829 Neighboring gene MPRA-validated peak6764 silencer Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_112524.1 

    Range
    101..767
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    136399206..136399872
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    137706517..137707183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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