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LOC127403553 H3K27ac hESC enhancer GRCh37_chr5:112849193-112849694 [ Homo sapiens (human) ]

Gene ID: 127403553, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127403553
Gene description
H3K27ac hESC enhancer GRCh37_chr5:112849193-112849694
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127403553 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (113513496..113513997)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (114026203..114026704)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (112849193..112849694)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene MCC regulator of WNT signaling pathway Neighboring gene uncharacterized LOC107986366 Neighboring gene Sharpr-MPRA regulatory region 13961 Neighboring gene testis specific serine kinase 1B Neighboring gene RNA, U4atac small nuclear 13, pseudogene Neighboring gene uncharacterized LOC124901046 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22921 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16243 Neighboring gene MPRA-validated peak5423 silencer Neighboring gene YTH N6-methyladenosine RNA binding protein C2 Neighboring gene uncharacterized LOC107986441 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:113001311-113001413 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:113010540-113011739 Neighboring gene NANOG hESC enhancer GRCh37_chr5:113018255-113018802 Neighboring gene uncharacterized LOC105379127 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:113111806-113112399

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_105502.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    113513496..113513997
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    114026203..114026704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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