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LOC127401463 OCT4-NANOG hESC enhancer GRCh37_chr4:124299800-124300518 [ Homo sapiens (human) ]

Gene ID: 127401463, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127401463
Gene description
OCT4-NANOG hESC enhancer GRCh37_chr4:124299800-124300518
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127401463 in Genome Data Viewer
Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (123378645..123379363)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (126682746..126683464)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (124299800..124300518)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900772 Neighboring gene Sharpr-MPRA regulatory region 14026 Neighboring gene uncharacterized LOC124900774 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124271175-124271705 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:124272617-124273118 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15667 Neighboring gene sprouty RTK signaling antagonist 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:124339462-124340019 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:124356795-124357294 Neighboring gene VISTA enhancer hs1582 Neighboring gene NANOG hESC enhancer GRCh37_chr4:124422837-124423338 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:124426696-124427543 Neighboring gene tRNA-Cys (anticodon GCA) 2-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_103423.1 

    Range
    101..819
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    123378645..123379363
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    126682746..126683464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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