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LOC127272588 H3K4me1 hESC enhancer GRCh37_chr2:10979932-10980432 [ Homo sapiens (human) ]

Gene ID: 127272588, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127272588
Gene description
H3K4me1 hESC enhancer GRCh37_chr2:10979932-10980432
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127272588 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (10839806..10840306)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (10869805..10870305)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (10979932..10980432)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit C2 Neighboring gene uncharacterized LOC105373428 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:10911826-10911981 Neighboring gene protein disulfide isomerase family A member 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15312 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11166 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:10959839-10961038 Neighboring gene RNA, U7 small nuclear 176 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:10971256-10971756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:10975391-10975891 Neighboring gene uncharacterized LOC124905973 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:11001513-11002014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:11002015-11002516 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11167 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15314 Neighboring gene long intergenic non-protein coding RNA 1954

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_094439.1 

    Range
    101..601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    10839806..10840306
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    10869805..10870305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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