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LOC127270811 NANOG hESC enhancer GRCh37_chr1:170632177-170632704 [ Homo sapiens (human) ]

Gene ID: 127270811, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127270811
Gene description
NANOG hESC enhancer GRCh37_chr1:170632177-170632704
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127270811 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (170663036..170663563)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (170019302..170019827)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (170632177..170632704)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904453 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:170588042-170589241 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:170600473-170600972 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:170607884-170609083 Neighboring gene uncharacterized LOC105371610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:170633905-170634765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:170637090-170637612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:170637613-170638135 Neighboring gene paired related homeobox 1 Neighboring gene uncharacterized LOC124904454 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:170803258-170804457 Neighboring gene uncharacterized LOC124904455

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_092663.1 

    Range
    101..628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    170663036..170663563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    170019302..170019827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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