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LOC126860859 BRD4-independent group 4 enhancer GRCh37_chr10:11113336-11114535 [ Homo sapiens (human) ]

Gene ID: 126860859, updated on 12-Sep-2024

Summary

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Gene symbol
LOC126860859
Gene description
BRD4-independent group 4 enhancer GRCh37_chr10:11113336-11114535
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126860859 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (11071373..11072572)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (11081648..11082847)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (11113336..11114535)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 2 Neighboring gene long intergenic non-protein coding RNA 710 Neighboring gene uncharacterized LOC124902376 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2123 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11075383-11075893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:11091414-11091914 Neighboring gene CELF2 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2125 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2993 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2994 Neighboring gene Sharpr-MPRA regulatory region 4729 Neighboring gene Sharpr-MPRA regulatory region 12202 Neighboring gene NANOG hESC enhancer GRCh37_chr10:11224724-11225225 Neighboring gene uncharacterized LOC124902375 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2999 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3005 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3007 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3008 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:11334439-11334940 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:11334941-11335440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3009 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11357313-11357819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:11357820-11358325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3010 Neighboring gene CELF2 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_085358.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    11071373..11072572
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    11081648..11082847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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