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EFCAB3P1 EFCAB3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 125775236, updated on 28-Oct-2024

Summary

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Official Symbol
EFCAB3P1provided by HGNC
Official Full Name
EFCAB3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:56232
See related
AllianceGenome:HGNC:56232
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HILPDA-AS1
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Genomic context

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See EFCAB3P1 in Genome Data Viewer
Location:
7q32.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (128455878..128470405)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (129767662..129782188)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128095932..128110459)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ribosomal protein L37 pseudogene 16 Neighboring gene RNA, U7 small nuclear 54 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:128093960-128094666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26599 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18608 Neighboring gene Sharpr-MPRA regulatory region 9446 Neighboring gene hypoxia inducible lipid droplet associated Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26600 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26601 Neighboring gene methyltransferase 2B, tRNA N3-cytidine Neighboring gene MPRA-validated peak6715 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18609 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18610 Neighboring gene ribosomal protein S10 pseudogene 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • HILPDA antisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_190218.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010655

  2. NR_190219.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010655

  3. NR_190220.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010655

  4. NR_190221.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010655

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    128455878..128470405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    129767662..129782188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_084045.1: Suppressed sequence

    Description
    NG_084045.1: This RefSeq was removed because it is now thought that this gene is transcribed.

  2. NR_186636.1: Suppressed sequence

    Description
    NR_186636.1: This RefSeq was removed because currently there is insufficient support for the transcript.

  3. NR_186637.1: Suppressed sequence

    Description
    NR_186637.1: This RefSeq was removed because currently there is insufficient support for the transcript.

  4. NR_186638.1: Suppressed sequence

    Description
    NR_186638.1: This RefSeq was removed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

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