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LOC124902439 uncharacterized LOC124902439 [ Homo sapiens (human) ]

Gene ID: 124902439, updated on 22-Oct-2024

Summary

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Gene symbol
LOC124902439
Gene description
uncharacterized LOC124902439
See related
Ensembl:ENSG00000228566
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124902439 in Genome Data Viewer
Location:
10q21.3
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (63872589..64692939)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (64730315..65551772)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984238 Neighboring gene uncharacterized LOC101929846 Neighboring gene uncharacterized LOC124902438 Neighboring gene Sharpr-MPRA regulatory region 9763 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr10:65444405-65444906 and GRCh37_chr10:65444907-65445406 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:65466673-65467872 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:65473036-65473714 Neighboring gene MPRA-validated peak967 silencer Neighboring gene uncharacterized LOC101928859 Neighboring gene ribosomal protein L7a pseudogene 50 Neighboring gene nuclear pore associated protein 1 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2412 Neighboring gene uncharacterized LOC105378333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3447 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:65801475-65801975 Neighboring gene Sharpr-MPRA regulatory region 2403 Neighboring gene Sharpr-MPRA regulatory region 9742 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:65880319-65880911 Neighboring gene DBF4 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 9231 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:66144462-66145292 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:66145293-66146122 Neighboring gene MPRA-validated peak969 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr10:66266441-66266965 Neighboring gene uncharacterized LOC105378335 Neighboring gene MPRA-validated peak971 silencer Neighboring gene MPRA-validated peak972 silencer Neighboring gene ribosomal protein L17 pseudogene 35 Neighboring gene uncharacterized LOC107984239 Neighboring gene Sharpr-MPRA regulatory region 14987 Neighboring gene MPRA-validated peak974 silencer Neighboring gene MPRA-validated peak975 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:66569879-66570556 Neighboring gene uncharacterized LOC105378336 Neighboring gene cytochrome P450 family 2 subfamily C member 61, pseudogene Neighboring gene annexin A2 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    63872589..64692939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062161.1 RNA Sequence

    Related
    ENST00000654191.1

  2. XR_007062160.1 RNA Sequence

  3. XR_007062164.1 RNA Sequence

    Related
    ENST00000764139.1

  4. XR_007062162.1 RNA Sequence

    Related
    ENST00000764137.1

  5. XR_007062159.1 RNA Sequence

  6. XR_007062163.1 RNA Sequence

  7. XR_007062166.1 RNA Sequence

  8. XR_007062165.1 RNA Sequence

  9. XR_007062167.1 RNA Sequence

  10. XR_007062168.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    64730315..65551772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081353.1 RNA Sequence

  2. XR_007081351.1 RNA Sequence

  3. XR_007081350.1 RNA Sequence

  4. XR_007081354.1 RNA Sequence

  5. XR_007081352.1 RNA Sequence

  6. XR_007081355.1 RNA Sequence

  7. XR_007081349.1 RNA Sequence

Nucleotide Protein
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Other Literature Sources
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