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LOC123119840 VIN3-like protein 1 [ Triticum aestivum (bread wheat) ]

Gene ID: 123119840, updated on 27-Nov-2024

Summary

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Gene symbol
LOC123119840
Gene description
VIN3-like protein 1
See related
EnsemblRapid:TraesCS5D03G0256900
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum aestivum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Also known as
TaVIL-D1
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Genomic context

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See LOC123119840 in Genome Data Viewer
Location:
chromosome: 5D
Exon count:
4
Annotation release Status Assembly Chr Location
100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 5D NC_057808.1 (123832950..123836563)

Chromosome 5D - NC_057808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123119838 Neighboring gene uncharacterized LOC123119839 Neighboring gene rho GTPase-activating protein 2-like Neighboring gene uncharacterized LOC123124472

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057808.1 Chromosome 5D Reference IWGSC CS RefSeq v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A TRIM insertion in the promoter of Ms2 causes male sterility in wheat. Xia C, et al. Nat Commun, 2017 May 12. PMID 28497807, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in epigenetic regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vernalization response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIN3-like protein 1
Names
PHD finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IWGSC CS RefSeq v2.1 Primary Assembly

Genomic

  1. NC_057808.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Range
    123832950..123836563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044539786.1 → XP_044395721.1  VIN3-like protein 1

    UniProtKB/TrEMBL
    U6C695, U6C7W3
    Related
    TraesCS5D03G0256900, TraesCS5D03G0256900.1
    Conserved Domains (2) summary
    smart00060
    Location:341 → 419
    FN3; Fibronectin type 3 domain
    pfam07227
    Location:139 → 258
    PHD_Oberon; PHD - plant homeodomain finger protein
Nucleotide Protein
Heading Accession and Version

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