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LOC122817693 long-chain-fatty-acid--CoA ligase ACSBG2-like [ Protopterus annectens (West African lungfish) ]

Gene ID: 122817693, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122817693
Gene description
long-chain-fatty-acid--CoA ligase ACSBG2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
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Genomic context

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See LOC122817693 in Genome Data Viewer
Location:
chromosome: 13.part0
Exon count:
15
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 13.part0 NC_056747.1 (185624712..186019280)

Chromosome 13.part0 - NC_056747.1Genomic Context describing neighboring genes Neighboring gene MPV17 mitochondrial inner membrane protein like 2 Neighboring gene regulatory factor X2 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene alkaline ceramidase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056747.1 Chromosome 13.part0 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables long-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase ACSBG2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056747.1 Reference PAN1.0 Primary Assembly

    Range
    185624712..186019280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044090763.1 → XP_043946698.1  long-chain-fatty-acid--CoA ligase ACSBG2-like

    Conserved Domains (1) summary
    cd05933
    Location:121 → 716
    ACSBG_like; Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)
Nucleotide Protein
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