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TCF21 transcription factor 21 [ Protopterus annectens (West African lungfish) ]

Gene ID: 122813375, updated on 22-Mar-2024

Summary

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Gene symbol
TCF21
Gene description
transcription factor 21
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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See TCF21 in Genome Data Viewer
Location:
chromosome: 1.part1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 1.part1 NC_056726.1 (610415326..610419204)

Chromosome 1.part1 - NC_056726.1Genomic Context describing neighboring genes Neighboring gene egl-9 family hypoxia inducible factor 1 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene SprT-like N-terminal domain Neighboring gene 5.8S ribosomal RNA Neighboring gene uncharacterized LOC122813382

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056726.1 Chromosome 1.part1 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056726.1 Reference PAN1.0 Primary Assembly

    Range
    610415326..610419204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044085668.1 → XP_043941603.1  transcription factor 21

    Conserved Domains (1) summary
    cd19704
    Location:77 → 140
    bHLH_TS_TCF21_capsulin; basic helix-loop-helix (bHLH) domain found in transcription factor 21 (TCF-21) and similar proteins
Nucleotide Protein
Heading Accession and Version

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