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EYA4 EYA transcriptional coactivator and phosphatase 4 [ Protopterus annectens (West African lungfish) ]

Gene ID: 122806559, updated on 22-Mar-2024

Summary

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Gene symbol
EYA4
Gene description
EYA transcriptional coactivator and phosphatase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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See EYA4 in Genome Data Viewer
Location:
chromosome: 1.part1
Exon count:
20
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 1.part1 NC_056726.1 (617780270..620902403)

Chromosome 1.part1 - NC_056726.1Genomic Context describing neighboring genes Neighboring gene 5.8S ribosomal RNA Neighboring gene uncharacterized LOC122813382 Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene probable ATP-dependent RNA helicase DDX43 Neighboring gene potassium voltage-gated channel subfamily Q member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056726.1 Chromosome 1.part1 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of extrinsic apoptotic signaling pathway in absence of ligand IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eyes absent homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056726.1 Reference PAN1.0 Primary Assembly

    Range
    617780270..620902403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044077094.1 → XP_043933029.1  eyes absent homolog 4

    Conserved Domains (2) summary
    PRK10263
    Location:161 → 343
    PRK10263; DNA translocase FtsK; Provisional
    cd02601
    Location:371 → 642
    HAD_Eya; protein tyrosine phosphatase domain of the nuclear transcription factor of Eyes absent (Eya) and related phosphatase domains
Nucleotide Protein
Heading Accession and Version

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