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SPRTN SprT-like N-terminal domain [ Protopterus annectens (West African lungfish) ]

Gene ID: 122806550, updated on 22-Mar-2024

Summary

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Gene symbol
SPRTN
Gene description
SprT-like N-terminal domain
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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See SPRTN in Genome Data Viewer
Location:
chromosome: 1.part1
Exon count:
5
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 1.part1 NC_056726.1 (606129995..606377044)

Chromosome 1.part1 - NC_056726.1Genomic Context describing neighboring genes Neighboring gene translin associated factor X Neighboring gene egl-9 family hypoxia inducible factor 1 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transcription factor 21 Neighboring gene 5.8S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056726.1 Chromosome 1.part1 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-dependent metalloprotease SPRTN

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056726.1 Reference PAN1.0 Primary Assembly

    Range
    606129995..606377044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044077081.1 → XP_043933016.1  DNA-dependent metalloprotease SPRTN

    Conserved Domains (2) summary
    smart00734
    Location:531 → 553
    ZnF_Rad18; Rad18-like CCHC zinc finger
    smart00731
    Location:83 → 252
    SprT; SprT homologues
Nucleotide Protein
Heading Accession and Version

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