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LOC121880495 UDP-galactose translocator-like [ Homarus americanus (American lobster) ]

Gene ID: 121880495, updated on 1-Jul-2024

Summary

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Gene symbol
LOC121880495
Gene description
UDP-galactose translocator-like
Locus tag
Hamer_G020314
See related
EnsemblRapid:LOC121880495
Gene type
protein coding
RefSeq status
MODEL
Organism
Homarus americanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Nephropoidea; Nephropidae; Homarus
Also known as
Slc35A2-L
Orthologs
fruit fly all
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Genomic context

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See LOC121880495 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current GMGI_Hamer_2.0 (GCF_018991925.1) Unplaced Scaffold NW_024748849.1 (1053077..1079961, complement)

NW_024748849.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121880491 Neighboring gene low-density lipoprotein receptor-like Neighboring gene uncharacterized LOC121880493 Neighboring gene NTF2-related export protein 1 Neighboring gene PHD finger protein rhinoceros

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024748849 Unplaced Scaffold Reference GMGI_Hamer_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prediction of a neuropeptidome for the eyestalk ganglia of the lobster Homarus americanus using a tissue-specific de novo assembled transcriptome. Christie AE, et al. Gen Comp Endocrinol, 2017 Mar 1. PMID 27823957, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transporter-like; UDP-galactose translocator-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homarus americanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GMGI_Hamer_2.0 Primary Assembly

Genomic

  1. NW_024748849.1 Reference GMGI_Hamer_2.0 Primary Assembly

    Range
    1053077..1079961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042347010.1 → XP_042202944.1  UDP-galactose translocator-like isoform X3

    UniProtKB/TrEMBL
    A0A8J5JPT7
    Related
    XP_042202944.1, XM_042347010.1
    Conserved Domains (1) summary
    TIGR00803
    Location:91 → 316
    nst; UDP-galactose transporter

  2. XM_042347009.1 → XP_042202943.1  UDP-N-acetylglucosamine transporter-like isoform X2

    UniProtKB/TrEMBL
    A0A8J5JPT7
    Related
    XP_042202943.1, XM_042347009.1
    Conserved Domains (1) summary
    TIGR00803
    Location:91 → 316
    nst; UDP-galactose transporter

  3. XM_042387726.1 → XP_042243660.1  UDP-N-acetylglucosamine transporter-like isoform X1

    UniProtKB/TrEMBL
    A0A8J5JPT7
    Related
    XP_042243660.1, XM_042387726.1
    Conserved Domains (1) summary
    TIGR00803
    Location:91 → 316
    nst; UDP-galactose transporter

RNA

  1. XR_006086264.1 RNA Sequence

    Related
    XR_006086264.1
Nucleotide Protein
Heading Accession and Version

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