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PTPRT-DT PTPRT divergent transcript [ Homo sapiens (human) ]

Gene ID: 121853075, updated on 28-Oct-2024

Summary

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Official Symbol
PTPRT-DTprovided by HGNC
Official Full Name
PTPRT divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55715
See related
Ensembl:ENSG00000233508 AllianceGenome:HGNC:55715
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PTPRT-DT in Genome Data Viewer
Location:
20q13.11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (43190065..43202599)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (44924100..44936634)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (41818705..41831239)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type T Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:41614665-41615864 Neighboring gene PTPRT antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:41733081-41733580 Neighboring gene RN7SK pseudogene 100 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:41804429-41805039 Neighboring gene RNA, 7SL, cytoplasmic 666, pseudogene Neighboring gene peptidylprolyl isomerase A pseudogene 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186413.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL021395
    Related
    ENST00000658035.2

  2. NR_186414.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL021395
    Related
    ENST00000670415.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    43190065..43202599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    44924100..44936634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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