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ERRFI1-DT ERRFI1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 121832806, updated on 28-Oct-2024

Summary

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Official Symbol
ERRFI1-DTprovided by HGNC
Official Full Name
ERRFI1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55646
See related
AllianceGenome:HGNC:55646
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See ERRFI1-DT in Genome Data Viewer
Location:
1p36.23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (8026493..8127070)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (7557420..7658149)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (8086553..8187130)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903834 Neighboring gene Sharpr-MPRA regulatory region 3725 Neighboring gene Sharpr-MPRA regulatory region 3772 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 191 Neighboring gene ERBB receptor feedback inhibitor 1 Neighboring gene Sharpr-MPRA regulatory region 2737 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:8105847-8107046 Neighboring gene MPRA-validated peak44 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8127937-8128436 Neighboring gene ribosomal protein L7a pseudogene 18 Neighboring gene VISTA enhancer hs1833 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:8154529-8155728 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:8156741-8157940 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8175654-8176154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 100 Neighboring gene uncharacterized LOC107984915 Neighboring gene Sharpr-MPRA regulatory region 865 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:8227009-8227682 Neighboring gene RPL7AP18-LOC102724539 intergenic ENCODE-defined enhancer Neighboring gene eukaryotic translation initiation factor 2 subunit gamma pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185980.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL034417, AL358876

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    8026493..8127070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    7557420..7658149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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