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xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 [ Carcharodon carcharias (great white shark) ]

Gene ID: 121276248, updated on 22-Mar-2024

Summary

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Gene symbol
xrcc2
Gene description
X-ray repair complementing defective repair in Chinese hamster cells 2
See related
EnsemblRapid:ENSCHSG00020002967
Gene type
protein coding
RefSeq status
MODEL
Organism
Carcharodon carcharias
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Lamniformes; Alopiidae; Carcharodon
Orthologs
human zebrafish all
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Genomic context

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See xrcc2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
100 current sCarCar2.pri (GCF_017639515.1) 3 NC_054469.1 (27755326..27772721, complement)

Chromosome 3 - NC_054469.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121275847 Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene lysine (K)-specific methyltransferase 2Ca Neighboring gene actin related protein 3B Neighboring gene dipeptidyl-peptidase 6a Neighboring gene late histone H2B.L4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054469.1 Chromosome 3 Reference sCarCar2.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein XRCC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carcharodon carcharias Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sCarCar2.pri Primary Assembly

Genomic

  1. NC_054469.1 Reference sCarCar2.pri Primary Assembly

    Range
    27755326..27772721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041184453.1 → XP_041040387.1  DNA repair protein XRCC2

    Related
    ENSCHSP00020004930.1, ENSCHST00020005548.1
    Conserved Domains (1) summary
    TIGR02236
    Location:45 → 235
    recomb_radA; DNA repair and recombination protein RadA
Nucleotide Protein
Heading Accession and Version

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