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LOC121175323 probable WRKY transcription factor 9 [ Glycine max (soybean) ]

Gene ID: 121175323, updated on 7-Dec-2023

Summary

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Gene symbol
LOC121175323
Gene description
probable WRKY transcription factor 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC121175323 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (5962661..5964004)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100806745 Neighboring gene uncharacterized LOC102669148 Neighboring gene mitogen-activated protein kinase kinase kinase 1 Neighboring gene uncharacterized LOC100797335

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_038244.2 Chromosome 8 Reference Glycine_max_v4.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    5962661..5964004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041018425.1 → XP_040874359.1  probable WRKY transcription factor 9

    UniProtKB/TrEMBL
    A0A0R0IPH3
    Conserved Domains (1) summary
    smart00774
    Location:141 → 188
    WRKY; DNA binding domain
Nucleotide Protein
Heading Accession and Version

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