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SLC6A12 solute carrier family 6 member 12 [ Falco naumanni (lesser kestrel) ]

Gene ID: 121088585, updated on 3-Aug-2024

Summary

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Gene symbol
SLC6A12
Gene description
solute carrier family 6 member 12
Gene type
protein coding
RefSeq status
MODEL
Organism
Falco naumanni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Falconiformes; Falconidae; Falco
Orthologs
human all
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Genomic context

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See SLC6A12 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
100 current bFalNau1.pat (GCF_017639655.1) 5 NC_054058.1 (24924815..24964839)

Chromosome 5 - NC_054058.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 5A Neighboring gene uncharacterized LOC121089447 Neighboring gene solute carrier family 6 member 13 Neighboring gene sodium- and chloride-dependent GABA transporter 1-like Neighboring gene IQ motif and Sec7 domain ArfGEF 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054058.1 Chromosome 5 Reference bFalNau1.pat Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent betaine transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Falco naumanni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bFalNau1.pat Primary Assembly

Genomic

  1. NC_054058.1 Reference bFalNau1.pat Primary Assembly

    Range
    24924815..24964839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040594917.1 → XP_040450851.1  sodium- and chloride-dependent betaine transporter isoform X3

    Conserved Domains (1) summary
    cl00456
    Location:42 → 553
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_040594916.1 → XP_040450850.1  sodium- and chloride-dependent betaine transporter isoform X2

    Conserved Domains (1) summary
    cd11511
    Location:29 → 568
    SLC6sbd_BGT1; Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

  3. XM_040594915.1 → XP_040450849.1  sodium- and chloride-dependent betaine transporter isoform X2

    Conserved Domains (1) summary
    cd11511
    Location:29 → 568
    SLC6sbd_BGT1; Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

  4. XM_040594913.1 → XP_040450847.1  sodium- and chloride-dependent betaine transporter isoform X1

    Conserved Domains (1) summary
    cd11511
    Location:68 → 607
    SLC6sbd_BGT1; Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

  5. XM_040594914.1 → XP_040450848.1  sodium- and chloride-dependent betaine transporter isoform X2

    Conserved Domains (1) summary
    cd11511
    Location:29 → 568
    SLC6sbd_BGT1; Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain
Nucleotide Protein
Heading Accession and Version

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