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RNF170 ring finger protein 170 [ Hirundo rustica (Barn swallow) ]

Gene ID: 120765424, updated on 3-Aug-2024

Summary

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Gene symbol
RNF170
Gene description
ring finger protein 170
See related
EnsemblRapid:ENSHRRG00010020268
Gene type
protein coding
RefSeq status
MODEL
Organism
Hirundo rustica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
Orthologs
human mouse all
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Genomic context

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See RNF170 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) Z NC_053488.1 (73351277..73376813, complement)

Chromosome Z - NC_053488.1Genomic Context describing neighboring genes Neighboring gene transcription factor JunD-like Neighboring gene THAP domain containing 1 Neighboring gene hook microtubule tethering protein 3 Neighboring gene E3 ubiquitin-protein ligase KCMF1-like Neighboring gene farnesyltransferase, CAAX box, subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053488.1 Chromosome Z Reference bHirRus1.pri.v3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bHirRus1.pri.v3

Genomic

  1. NC_053488.1 Reference bHirRus1.pri.v3

    Range
    73351277..73376813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040090279.2 → XP_039946213.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    A0A3M0L9P4, A0A7L4F214
    Conserved Domains (3) summary
    COG5152
    Location:63 → 156
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    cd16553
    Location:88 → 131
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:203 → 238
    DUF1232; Protein of unknown function (DUF1232)

  2. XM_040090274.1 → XP_039946208.1  E3 ubiquitin-protein ligase RNF170 isoform X2

    UniProtKB/TrEMBL
    A0A7L4F214
    Conserved Domains (2) summary
    cd16553
    Location:87 → 130
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:202 → 237
    DUF1232; Protein of unknown function (DUF1232)

  3. XM_040090273.1 → XP_039946207.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    A0A3M0L9P4, A0A7L4F214
    Related
    ENSHRRP00010028525.1, ENSHRRT00010032420.1
    Conserved Domains (3) summary
    COG5152
    Location:63 → 156
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    cd16553
    Location:88 → 131
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:203 → 238
    DUF1232; Protein of unknown function (DUF1232)

  4. XM_040090278.2 → XP_039946212.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    A0A3M0L9P4, A0A7L4F214
    Conserved Domains (3) summary
    COG5152
    Location:63 → 156
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    cd16553
    Location:88 → 131
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:203 → 238
    DUF1232; Protein of unknown function (DUF1232)

  5. XM_040090276.2 → XP_039946210.1  E3 ubiquitin-protein ligase RNF170 isoform X3

    Conserved Domains (2) summary
    cd16553
    Location:3 → 46
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:118 → 153
    DUF1232; Protein of unknown function (DUF1232)

  6. XM_040090277.1 → XP_039946211.1  E3 ubiquitin-protein ligase RNF170 isoform X3

    Conserved Domains (2) summary
    cd16553
    Location:3 → 46
    RING-HC_RNF170; RING finger, HC subclass, found in RING finger protein 170 (RNF170) and similar proteins
    pfam06803
    Location:118 → 153
    DUF1232; Protein of unknown function (DUF1232)
Nucleotide Protein
Heading Accession and Version

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