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LOC120713917 probable jasmonic acid carboxyl methyltransferase 1 [ Panicum virgatum (switchgrass) ]

Gene ID: 120713917, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120713917
Gene description
probable jasmonic acid carboxyl methyltransferase 1
Locus tag
PVAP13_6KG099100
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120713917 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (11549045..11550877)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56130 Neighboring gene uncharacterized LOC120711743 Neighboring gene putative disease resistance RPP13-like protein 3 Neighboring gene uncharacterized LOC120711744 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable jasmonic acid carboxyl methyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    11549045..11550877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039999877.1 → XP_039855811.1  probable jasmonic acid carboxyl methyltransferase 1

    UniProtKB/TrEMBL
    A0A8T0R927, A0A8T0RB11
    Conserved Domains (1) summary
    pfam03492
    Location:39 → 332
    Methyltransf_7; SAM dependent carboxyl methyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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