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LOC120671635 tubulin beta-1 chain [ Panicum virgatum (switchgrass) ]

Gene ID: 120671635, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120671635
Gene description
tubulin beta-1 chain
Locus tag
PVAP13_4NG296100
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120671635 in Genome Data Viewer
Location:
chromosome: 4N
Exon count:
3
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 4N NC_053148.1 (45674059..45676701, complement)

Chromosome 4N - NC_053148.1Genomic Context describing neighboring genes Neighboring gene twinkle homolog protein, chloroplastic/mitochondrial-like Neighboring gene patellin-4-like Neighboring gene uncharacterized LOC120669459 Neighboring gene protein G1-like1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053148.1 Chromosome 4N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin beta-1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053148.1 Reference P.virgatum_v5 Primary Assembly

    Range
    45674059..45676701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039952028.1 → XP_039807962.1  tubulin beta-1 chain

    UniProtKB/TrEMBL
    A0A8T0TFD4, A0A8T0WUB3
    Conserved Domains (1) summary
    PLN00220
    Location:1 → 444
    PLN00220; tubulin beta chain; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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