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LOC120671611 protein DETOXIFICATION 52-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120671611, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120671611
Gene description
protein DETOXIFICATION 52-like
Locus tag
PVAP13_4NG061876
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120671611 in Genome Data Viewer
Location:
chromosome: 4N
Exon count:
1
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 4N NC_053148.1 (32682010..32684156, complement)

Chromosome 4N - NC_053148.1Genomic Context describing neighboring genes Neighboring gene LRR receptor-like serine/threonine-protein kinase HSL2 Neighboring gene uncharacterized LOC120670362 Neighboring gene uncharacterized LOC120670514 Neighboring gene nuclear poly(A) polymerase 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053148.1 Chromosome 4N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein DETOXIFICATION 52-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053148.1 Reference P.virgatum_v5 Primary Assembly

    Range
    32682010..32684156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039951997.1 → XP_039807931.1  protein DETOXIFICATION 52-like

    UniProtKB/TrEMBL
    A0A8T0TDI9
    Conserved Domains (1) summary
    cd13132
    Location:60 → 497
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family
Nucleotide Protein Strain
Heading Accession and Version

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