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GABPB1 GA binding protein transcription factor subunit beta 1 [ Pteropus giganteus (Indian flying fox) ]

Gene ID: 120623115, updated on 30-Mar-2024

Summary

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Gene symbol
GABPB1
Gene description
GA binding protein transcription factor subunit beta 1
See related
EnsemblRapid:ENSPGIG00000013661
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus giganteus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See GABPB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024349801.1 (21421974..21478540)

NW_024349801.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 8 Neighboring gene uncharacterized LOC120623112 Neighboring gene histidine decarboxylase Neighboring gene U4 spliceosomal RNA Neighboring gene solute carrier family 27 member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024349801 Unplaced Scaffold Reference Ma_sr-lr_union100

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GA-binding protein subunit beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ma_sr-lr_union100

Genomic

  1. NW_024349801.1 Reference Ma_sr-lr_union100

    Range
    21421974..21478540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039889072.1 → XP_039745006.1  GA-binding protein subunit beta-1 isoform X3

    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:341 → 390
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  2. XM_039889074.1 → XP_039745008.1  GA-binding protein subunit beta-1 isoform X5

    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:329 → 378
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  3. XM_039889070.1 → XP_039745004.1  GA-binding protein subunit beta-1 isoform X3

    Related
    ENSPGIP00000011532.1, ENSPGIT00000017935.1
    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:341 → 390
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  4. XM_039889073.1 → XP_039745007.1  GA-binding protein subunit beta-1 isoform X3

    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:341 → 390
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  5. XM_039889068.1 → XP_039745002.1  GA-binding protein subunit beta-1 isoform X1

    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:340 → 389
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  6. XM_039889069.1 → XP_039745003.1  GA-binding protein subunit beta-1 isoform X2

    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam16566
    Location:328 → 377
    CREPT; Cell-cycle alteration and expression-elevated protein in tumor

  7. XM_039889071.1 → XP_039745005.1  GA-binding protein subunit beta-1 isoform X4

    Conserved Domains (3) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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