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tubb1 tubulin, beta 1 class VI [ Pimephales promelas (fathead minnow) ]

Gene ID: 120494273, updated on 21-Mar-2024

Summary

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Gene symbol
tubb1
Gene description
tubulin, beta 1 class VI
Locus tag
F2P79_003709
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See tubb1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121432.1 (1421498..1424912)

NW_024121432.1Genomic Context describing neighboring genes Neighboring gene negative elongation factor complex member C/D Neighboring gene GNAS complex locus Neighboring gene ATP synthase F1 subunit epsilon Neighboring gene charged multivesicular body protein 4Ba

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121432 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin beta-1 chain
Names
tubulin beta-2b chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121432.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    1421498..1424912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039693505.1 → XP_039549439.1  tubulin beta-1 chain

    Conserved Domains (1) summary
    PTZ00010
    Location:1 → 431
    PTZ00010; tubulin beta chain; Provisional
Nucleotide Protein
Heading Accession and Version

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