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scrn2 secernin 2 [ Pimephales promelas (fathead minnow) ]

Gene ID: 120493988, updated on 21-Mar-2024

Summary

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Gene symbol
scrn2
Gene description
secernin 2
Locus tag
F2P79_004386
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Also known as
secernin-3
Orthologs
human zebrafish all
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Genomic context

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See scrn2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121432.1 (29187221..29198416, complement)

NW_024121432.1Genomic Context describing neighboring genes Neighboring gene OMA1 zinc metallopeptidase Neighboring gene Myb-like, SWIRM and MPN domains 1 Neighboring gene SUN domain containing ossification factor Neighboring gene transmembrane p24 trafficking protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121432 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type exopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dipeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secernin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121432.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    29187221..29198416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039693038.1 → XP_039548972.1  secernin-2

    Conserved Domains (1) summary
    cl00467
    Location:7 → 232
    Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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