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otx2a orthodenticle homeobox 2a [ Pimephales promelas (fathead minnow) ]

Gene ID: 120489799, updated on 21-Mar-2024

Summary

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Gene symbol
otx2a
Gene description
orthodenticle homeobox 2a
Locus tag
F2P79_007994
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See otx2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121100.1 (4833894..4863559, complement)

NW_024121100.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose pyrophosphorylase 2a Neighboring gene malate dehydrogenase 1Aa, NAD (soluble) Neighboring gene GPRIN family member 3b Neighboring gene uncharacterized LOC120489820

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121100 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein OTX1 A
Names
homeobox protein OTX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121100.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    4833894..4863559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039686915.1 → XP_039542849.1  homeobox protein OTX1 A isoform X1

    Conserved Domains (1) summary
    cd00086
    Location:58 → 106
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_039686931.1 → XP_039542865.1  homeobox protein OTX1 A isoform X2

    Conserved Domains (2) summary
    pfam00046
    Location:49 → 95
    Homeobox; Homeobox domain
    pfam03529
    Location:180 → 263
    TF_Otx; Otx1 transcription factor

  3. XM_039686924.1 → XP_039542858.1  homeobox protein OTX1 A isoform X2

    Conserved Domains (2) summary
    pfam00046
    Location:49 → 95
    Homeobox; Homeobox domain
    pfam03529
    Location:180 → 263
    TF_Otx; Otx1 transcription factor
Nucleotide Protein
Heading Accession and Version

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